Research Use Only
Diversity analysis(Alpha diversity > Rarefaction Curve)
Rarefaction Curve (ASVs)
Select a Group Type:
* Alpha rarefaction graph shows whether the number of reads used in analysis
was sufficient in identifying species/ASV.
If the curve becomes flatter to the right, it indicates that a reasonable
number of reads have been used in the analysis,thus additional sequencing is
not necessary.
In contrast, if the graph does not plateau, the additional reads is likely
to discover more ASVs for the sample (x-axis: read number; y-axis: number of
ASVS).
Below each plot is a table displaying average values for each measure of
alpha diversity for each group of samples the specified category.
* Metric : ASVs
Rarefaction Curve (Chao1)
Select a Group Type:
* Alpha rarefaction graph shows whether the number of reads used in analysis
was sufficient in identifying species/ASV.
If the curve becomes flatter to the right, it indicates that a reasonable
number of reads have been used in the analysis,thus additional sequencing is
not necessary.
In contrast, if the graph does not plateau, the additional reads is likely
to discover more ASVs for the sample (x-axis: read number; y-axis: number of
ASVS).
Below each plot is a table displaying average values for each measure of
alpha diversity for each group of samples the specified category.
* Metric : Chao1
Rarefaction Curve (Shannon)
Select a Group Type:
* Alpha rarefaction graph shows whether the number of reads used in analysis
was sufficient in identifying species/ASV.
If the curve becomes flatter to the right, it indicates that a reasonable
number of reads have been used in the analysis,thus additional sequencing is
not necessary.
In contrast, if the graph does not plateau, the additional reads is likely
to discover more ASVs for the sample (x-axis: read number; y-axis: number of
ASVS).
Below each plot is a table displaying average values for each measure of
alpha diversity for each group of samples the specified category.
* Metric : Shannon
Rarefaction Curve
(Faiths_PD)
Select a Group Type:
* Alpha rarefaction graph shows whether the number of reads used in analysis
was sufficient in identifying species/ASV.
If the curve becomes flatter to the right, it indicates that a reasonable
number of reads have been used in the analysis,thus additional sequencing is
not necessary.
In contrast, if the graph does not plateau, the additional reads is likely
to discover more ASVs for the sample (x-axis: read number; y-axis: number of
ASVS).
Below each plot is a table displaying average values for each measure of
alpha diversity for each group of samples the specified category.
* Metric : Faith's PD
Rarefaction Curve (Simpson)
Select a Group Type:
* Alpha rarefaction graph shows whether the number of reads used in analysis
was sufficient in identifying species/ASV.
If the curve becomes flatter to the right, it indicates that a reasonable
number of reads have been used in the analysis,thus additional sequencing is
not necessary.
In contrast, if the graph does not plateau, the additional reads is likely
to discover more ASVs for the sample (x-axis: read number; y-axis: number of
ASVS).
Below each plot is a table displaying average values for each measure of
alpha diversity for each group of samples the specified category.
* Metric : Simpson
Rarefaction Curve
(Gini-Simpson)
Select a Group Type:
* Alpha rarefaction graph shows whether the number of reads used in analysis
was sufficient in identifying species/ASV.
If the curve becomes flatter to the right, it indicates that a reasonable
number of reads have been used in the analysis,thus additional sequencing is
not necessary.
In contrast, if the graph does not plateau, the additional reads is likely
to discover more ASVs for the sample (x-axis: read number; y-axis: number of
ASVS).
Below each plot is a table displaying average values for each measure of
alpha diversity for each group of samples the specified category.
* Metric : Gini-Simpson
Group Management
How to Customize Groups:
- Click Download Template to get the
metadata.xlsxfile. - Open the file and specify your custom groups for each sample in the 'Group' sheet.
- Save the changes and click Upload File to apply your custom grouping.
Important: Custom group settings are temporary. If you navigate away or refresh this page, you will need to re-upload the file.