Diversity analysis

(Beta diversity > UPGMA tree)


UPGMA Tree - Bray Curtis
Select a Group Type:


* Unweighted Pair Group Method with Arithmetic mean (UPGMA) is type of hierarchical clustering method using average linkage and can be used to interpret the distance matrix (bray_curtis_upgma_cluster.tre). The output is a file that can be opened with tree viewing software, such as FigTree. For your own purposes, the distance matrix file can be used to draw your own phylogenetic tree using a suitable tool

UPGMA Tree - Weighted Unifrac
Select a Group Type:


* Unweighted Pair Group Method with Arithmetic mean (UPGMA) is type of hierarchical clustering method using average linkage and can be used to interpret the distance matrix (weighted_unifrac_upgma_cluster.tre). The output is a file that can be opened with tree viewing software, such as FigTree. For your own purposes, the distance matrix file can be used to draw your own phylogenetic tree using a suitable tool

UPGMA Tree - Unweighted Unifrac
Select a Group Type:


* Unweighted Pair Group Method with Arithmetic mean (UPGMA) is type of hierarchical clustering method using average linkage and can be used to interpret the distance matrix (unweighted_unifrac_upgma_cluster.tre). The output is a file that can be opened with tree viewing software, such as FigTree. For your own purposes, the distance matrix file can be used to draw your own phylogenetic tree using a suitable tool